Neet
v0.1.0
Getting Started
State Space
Interfaces
Cellular Automata
Boolean Networks
Synchronous Network Analysis
Sensitivity
Information Architecture
Exceptions
References
Neet
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Index
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A
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B
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C
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D
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E
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F
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H
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I
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L
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M
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N
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P
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R
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S
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T
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U
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V
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W
_
__contains__() (neet.statespace.StateSpace method)
__init__() (neet.automata.eca.ECA method)
(neet.automata.reca.RewiredECA method)
(neet.boolean.LogicNetwork method)
(neet.boolean.WTNetwork method)
(neet.information.Architecture method)
(neet.statespace.StateSpace method)
(neet.synchronous.Landscape method)
__iter__() (neet.statespace.StateSpace method)
A
active_information() (in module neet.information)
(neet.information.Architecture method)
Architecture (class in neet.information)
attractor_lengths (neet.synchronous.Landscape attribute)
attractors (neet.synchronous.Landscape attribute)
attractors() (in module neet.synchronous)
average_difference_matrix() (in module neet.sensitivity)
average_sensitivity() (in module neet.sensitivity)
B
base (neet.statespace.StateSpace attribute)
basin_entropy() (in module neet.synchronous)
(neet.synchronous.Landscape method)
basin_sizes (neet.synchronous.Landscape attribute)
basins (neet.synchronous.Landscape attribute)
basins() (in module neet.synchronous)
boundary (neet.automata.eca.ECA attribute)
(neet.automata.reca.RewiredECA attribute)
C
c_elegans (in module neet.boolean.examples)
canalizing_edges() (in module neet.sensitivity)
canalizing_nodes() (in module neet.sensitivity)
code (neet.automata.eca.ECA attribute)
(neet.automata.reca.RewiredECA attribute)
D
decode() (neet.statespace.StateSpace method)
difference_matrix() (in module neet.sensitivity)
draw() (neet.automata.eca.ECA method)
(neet.automata.reca.RewiredECA method)
(neet.boolean.LogicNetwork method)
(neet.boolean.WTNetwork method)
E
ECA (class in neet.automata.eca)
encode() (neet.statespace.StateSpace method)
entropy_rate() (in module neet.information)
(neet.information.Architecture method)
F
FormatError (class in neet.exceptions)
H
heights (neet.synchronous.Landscape attribute)
I
in_degrees (neet.synchronous.Landscape attribute)
is_boolean_network() (in module neet.interfaces)
is_canalizing() (in module neet.sensitivity)
is_fixed_sized() (in module neet.interfaces)
is_network() (in module neet.interfaces)
is_uniform (neet.statespace.StateSpace attribute)
L
lambdaQ() (in module neet.sensitivity)
Landscape (class in neet.synchronous)
LogicNetwork (class in neet.boolean)
M
mouse_cortical_7B (in module neet.boolean.examples)
mouse_cortical_7C (in module neet.boolean.examples)
mutual_information() (in module neet.information)
(neet.information.Architecture method)
myeloid (in module neet.boolean.examples)
N
ndim (neet.statespace.StateSpace attribute)
neet.automata (module)
neet.automata.eca (module)
neet.automata.reca (module)
neet.boolean (module)
neet.boolean.conv (module)
neet.boolean.examples (module)
neet.boolean.logicnetwork (module)
neet.boolean.randomnet (module)
neet.boolean.wtnetwork (module)
neet.exceptions (module)
neet.information (module)
neet.interfaces (module)
neet.sensitivity (module)
neet.statespace (module)
neet.synchronous (module)
negative_threshold() (neet.boolean.WTNetwork static method)
neighbors() (in module neet.interfaces)
(neet.automata.eca.ECA method)
(neet.automata.reca.RewiredECA method)
(neet.boolean.LogicNetwork method)
(neet.boolean.WTNetwork method)
neighbors_in() (neet.automata.eca.ECA method)
(neet.automata.reca.RewiredECA method)
(neet.boolean.LogicNetwork method)
(neet.boolean.WTNetwork method)
neighbors_out() (neet.automata.eca.ECA method)
(neet.automata.reca.RewiredECA method)
(neet.boolean.LogicNetwork method)
(neet.boolean.WTNetwork method)
network (neet.synchronous.Landscape attribute)
P
p53_dmg (in module neet.boolean.examples)
p53_no_dmg (in module neet.boolean.examples)
positive_threshold() (neet.boolean.WTNetwork static method)
R
random_logic() (in module neet.boolean.randomnet)
read() (neet.boolean.WTNetwork static method)
read_logic() (neet.boolean.LogicNetwork class method)
read_table() (neet.boolean.LogicNetwork class method)
recurrence_times (neet.synchronous.Landscape attribute)
reduce_table() (neet.boolean.LogicNetwork method)
RewiredECA (class in neet.automata.reca)
S
s_cerevisiae (in module neet.boolean.examples)
s_pombe (in module neet.boolean.examples)
sensitivity() (in module neet.sensitivity)
size (neet.automata.reca.RewiredECA attribute)
(neet.boolean.LogicNetwork attribute)
(neet.boolean.WTNetwork attribute)
(neet.synchronous.Landscape attribute)
split_threshold() (neet.boolean.WTNetwork static method)
state_space() (neet.automata.eca.ECA method)
(neet.automata.reca.RewiredECA method)
(neet.boolean.LogicNetwork method)
(neet.boolean.WTNetwork method)
StateSpace (class in neet.statespace)
T
timeseries() (in module neet.synchronous)
(neet.synchronous.Landscape method)
to_networkx_graph() (in module neet.interfaces)
(neet.automata.eca.ECA method)
(neet.automata.reca.RewiredECA method)
(neet.boolean.LogicNetwork method)
(neet.boolean.WTNetwork method)
trajectory() (in module neet.synchronous)
(neet.synchronous.Landscape method)
transfer_entropy() (in module neet.information)
(neet.information.Architecture method)
transition_graph() (in module neet.synchronous)
transitions (neet.synchronous.Landscape attribute)
transitions() (in module neet.synchronous)
U
update() (neet.automata.eca.ECA method)
(neet.automata.reca.RewiredECA method)
(neet.boolean.LogicNetwork method)
(neet.boolean.WTNetwork method)
V
volume (neet.statespace.StateSpace attribute)
W
wiring (neet.automata.reca.RewiredECA attribute)
wt_to_logic() (in module neet.boolean.conv)
WTNetwork (class in neet.boolean)
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